PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734256
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 230aa    MW: 25109 Da    PI: 11.2334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734256genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05203225223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+k+F++   L++H +  H
  676734256 203 PCGSCKKTFNSEGALESHTKAkH 225
                6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.536202230IPR007087Zinc finger, C2H2
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
PfamPF128741.1E-4204224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSCHACTLRC RAGHDTQQRL GHQGRLGMVV FSFPRCRGRD HPSYAYLRCR AGQRPQSISS  60
CPRCQAGRRS LSSMIKGLPS RTRMRKGDDR LGMDSLSKIM PSRMGARKGH GWLCPFSSPK  120
CFRAGHKLYD VSRKRCEAET RKKRAHEAAP KTPVSAKKAK TEVTPKKTEE KKKGGPATPH  180
PAKKGGKTPT AATPTPKSAG QVPCGSCKKT FNSEGALESH TKAKHSATAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-08histone deacetylase 3